N - mixture models by species
modelling N by site to get relative abundance
abundance by site will be used as a cov on predator occupancy
7 models evaluated, dot, jdt + jdtSQ, lure + jdt + jdtSQ
Detections by Year:
|
Yr
|
2016
|
2017
|
2018
|
2019
|
2020
|
|
sites
|
19
|
31
|
19
|
32
|
26
|
|
detections
|
172
|
202
|
113
|
108
|
113
|
|
N.dot.model
|
21
|
39
|
31
|
49
|
65
|
WAIC
Models by WAIC:
|
model
|
description
|
WAIC
|
N.total.est
|
|
fm7
|
counts
|
69.99641
|
127
|
|
fm6
|
lure + jdt + jdtSq
|
2960.26811
|
204
|
|
fm5
|
jdt + jdtSq
|
2994.33509
|
247
|
|
fm4
|
lure + jdt
|
3002.02919
|
202
|
|
fm2
|
jdt
|
3048.63247
|
251
|
|
fm1
|
dot
|
3072.02958
|
205
|
|
fm3
|
lure
|
3126.63791
|
246
|
Model summaries:
model: fm1
summary table
|
param
|
covariate
|
iters_ef
|
mean
|
mode
|
hdi_89pct_lower
|
hdi_89pct_upper
|
bayes_P
|
pct.density
|
|
p[1]
|
NA
|
6541
|
0.367
|
0.367
|
0.32
|
0.42
|
0
|
1.001
|
|
p[2]
|
NA
|
1909
|
0.214
|
0.225
|
0.15
|
0.27
|
0
|
1.001
|
|
p[3]
|
NA
|
3497
|
0.100
|
0.097
|
0.07
|
0.13
|
0
|
1.001
|
|
p[4]
|
NA
|
2290
|
0.072
|
0.068
|
0.04
|
0.10
|
0
|
1.001
|
|
p[5]
|
NA
|
1548
|
0.062
|
0.056
|
0.04
|
0.09
|
0
|
1.001
|
|
lambda[1]
|
NA
|
10000
|
1.144
|
1.043
|
0.74
|
1.54
|
0
|
1.001
|
|
lambda[2]
|
NA
|
2708
|
1.416
|
1.281
|
0.88
|
1.93
|
0
|
1.001
|
|
lambda[3]
|
NA
|
4988
|
1.782
|
1.632
|
1.10
|
2.45
|
0
|
1.001
|
|
lambda[4]
|
NA
|
2648
|
1.785
|
1.64
|
1.02
|
2.46
|
0
|
1.001
|
|
lambda[5]
|
NA
|
1244
|
2.693
|
2.193
|
1.44
|
3.80
|
0
|
1.001
|
|
N[36]
|
NA
|
4888
|
1.893
|
2.002
|
1.00
|
3.00
|
0
|
1.0005
|
|
N[17]
|
NA
|
10000
|
1.000
|
err
|
1.00
|
1.00
|
err
|
err
|
|
N[125]
|
NA
|
3814
|
3.542
|
2.994
|
1.00
|
6.00
|
0
|
1.0008
|
|
N[78]
|
NA
|
6396
|
0.733
|
0
|
0.00
|
2.00
|
1
|
err
|
|
N[60]
|
NA
|
6198
|
2.286
|
2.003
|
1.00
|
3.00
|
0
|
1.0008
|
p[1]

p[2]

p[3]

p[4]

p[5]

lambda[1]

lambda[2]

lambda[3]

lambda[4]

lambda[5]

N[36]

N[17]

N[125]

N[78]

N[60]

summary table
|
param
|
covariate
|
iters_ef
|
mean
|
mode
|
hdi_89pct_lower
|
hdi_89pct_upper
|
bayes_P
|
pct.density
|
|
alpha
|
jdt
|
9116
|
0.445
|
0.447
|
0.37
|
0.52
|
0
|
1.001
|
|
alpha0
|
NA
|
1752
|
-2.232
|
-2.211
|
-2.42
|
-2.04
|
0
|
1.001
|
|
lambda[1]
|
NA
|
3478
|
3.258
|
3.137
|
2.31
|
4.18
|
0
|
1.001
|
|
lambda[2]
|
NA
|
3122
|
2.781
|
2.617
|
1.97
|
3.52
|
0
|
1.001
|
|
lambda[3]
|
NA
|
4982
|
1.826
|
1.77
|
1.20
|
2.40
|
0
|
1.001
|
|
lambda[4]
|
NA
|
5980
|
1.221
|
1.185
|
0.84
|
1.59
|
0
|
1.001
|
|
lambda[5]
|
NA
|
5323
|
1.824
|
1.75
|
1.26
|
2.35
|
0
|
1.001
|
|
N[114]
|
NA
|
9535
|
1.165
|
err
|
1.00
|
2.00
|
err
|
err
|
|
N[117]
|
NA
|
6212
|
1.779
|
2.002
|
1.00
|
3.00
|
0
|
1.0005
|
|
N[43]
|
NA
|
4710
|
4.550
|
4.002
|
3.00
|
6.00
|
0
|
1.001
|
|
N[102]
|
NA
|
5700
|
2.735
|
2.999
|
2.00
|
4.00
|
0
|
1.001
|
|
N[96]
|
NA
|
8366
|
1.128
|
err
|
1.00
|
2.00
|
err
|
err
|
alpha

alpha0

lambda[1]

lambda[2]

lambda[3]

lambda[4]

lambda[5]

N[114]

N[117]

N[43]

N[102]

N[96]

alpha relationship

summary table
|
param
|
covariate
|
iters_ef
|
mean
|
mode
|
hdi_89pct_lower
|
hdi_89pct_upper
|
bayes_P
|
pct.density
|
|
alpha
|
lure
|
8110
|
-0.114
|
-0.116
|
-0.20
|
-0.03
|
0.13005
|
0.9816
|
|
alpha0
|
NA
|
1959
|
-2.135
|
-2.127
|
-2.32
|
-1.96
|
0
|
1.001
|
|
lambda[1]
|
NA
|
3726
|
3.473
|
3.373
|
2.47
|
4.48
|
0
|
1.001
|
|
lambda[2]
|
NA
|
2707
|
2.621
|
2.422
|
1.89
|
3.30
|
0
|
1.001
|
|
lambda[3]
|
NA
|
5915
|
1.634
|
1.555
|
1.09
|
2.19
|
0
|
1.001
|
|
lambda[4]
|
NA
|
5407
|
1.240
|
1.184
|
0.87
|
1.62
|
0
|
1.001
|
|
lambda[5]
|
NA
|
5753
|
1.709
|
1.667
|
1.19
|
2.21
|
0
|
1.001
|
|
N[39]
|
NA
|
7096
|
2.930
|
3
|
2.00
|
4.00
|
0
|
1.0009
|
|
N[88]
|
NA
|
9655
|
0.031
|
err
|
0.00
|
0.00
|
err
|
err
|
|
N[94]
|
NA
|
6901
|
1.371
|
1
|
1.00
|
2.00
|
0
|
1.0001
|
|
N[66]
|
NA
|
7025
|
1.940
|
err
|
1.00
|
3.00
|
err
|
err
|
|
N[68]
|
NA
|
7053
|
2.088
|
err
|
1.00
|
3.00
|
err
|
err
|
alpha

alpha0

lambda[1]

lambda[2]

lambda[3]

lambda[4]

lambda[5]

N[39]

N[88]

N[94]

N[66]

N[68]

alpha relationship

summary table
|
param
|
covariate
|
iters_ef
|
mean
|
mode
|
hdi_89pct_lower
|
hdi_89pct_upper
|
bayes_P
|
pct.density
|
|
alpha[1]
|
lureDays
|
4712
|
-0.461
|
-0.461
|
-0.58
|
-0.35
|
0
|
1.001
|
|
alpha[2]
|
julianDt
|
5282
|
0.634
|
0.631
|
0.54
|
0.73
|
0
|
1.001
|
|
alpha0
|
NA
|
1776
|
-2.084
|
-2.083
|
-2.28
|
-1.89
|
0
|
1.001
|
|
lambda[1]
|
NA
|
3590
|
1.968
|
1.889
|
1.26
|
2.64
|
0
|
1.001
|
|
lambda[2]
|
NA
|
3694
|
1.956
|
1.872
|
1.37
|
2.57
|
0
|
1.001
|
|
lambda[3]
|
NA
|
5391
|
1.463
|
1.419
|
0.92
|
1.96
|
0
|
1.001
|
|
lambda[4]
|
NA
|
6228
|
1.084
|
1.025
|
0.72
|
1.41
|
0
|
1.001
|
|
lambda[5]
|
NA
|
5040
|
2.143
|
2.067
|
1.51
|
2.76
|
0
|
1.001
|
|
N[38]
|
NA
|
7684
|
1.974
|
1
|
1.00
|
3.00
|
0
|
1.0005
|
|
N[31]
|
NA
|
5540
|
1.881
|
err
|
1.00
|
2.00
|
err
|
err
|
|
N[4]
|
NA
|
5665
|
2.135
|
err
|
1.00
|
3.00
|
err
|
err
|
|
N[14]
|
NA
|
9118
|
1.034
|
err
|
1.00
|
1.00
|
err
|
err
|
|
N[29]
|
NA
|
8738
|
3.006
|
2.997
|
2.00
|
5.00
|
0
|
1.0009
|
alpha[1]

alpha[2]

alpha0

lambda[1]

lambda[2]

lambda[3]

lambda[4]

lambda[5]

N[38]

N[31]

N[4]

N[14]

N[29]

summary table
|
param
|
covariate
|
iters_ef
|
mean
|
mode
|
hdi_89pct_lower
|
hdi_89pct_upper
|
bayes_P
|
pct.density
|
|
alpha[1]
|
julianDt
|
2625
|
-0.086
|
-0.089
|
-0.22
|
0.05
|
0.62267
|
0.8412
|
|
alpha[2]
|
julianDtSq
|
2553
|
0.557
|
0.572
|
0.43
|
0.68
|
0
|
1.001
|
|
alpha0
|
NA
|
2071
|
-2.232
|
-2.219
|
-2.41
|
-2.05
|
0
|
1.001
|
|
lambda[1]
|
NA
|
3910
|
3.800
|
3.681
|
2.73
|
4.82
|
0
|
1.001
|
|
lambda[2]
|
NA
|
3434
|
2.379
|
2.287
|
1.72
|
3.04
|
0
|
1.001
|
|
lambda[3]
|
NA
|
5764
|
1.917
|
1.9
|
1.28
|
2.51
|
0
|
1.001
|
|
lambda[4]
|
NA
|
7056
|
1.129
|
1.094
|
0.78
|
1.47
|
0
|
1.001
|
|
lambda[5]
|
NA
|
5562
|
1.839
|
1.797
|
1.29
|
2.35
|
0
|
1.001
|
|
N[87]
|
NA
|
7820
|
2.588
|
3
|
2.00
|
4.00
|
0
|
1.0009
|
|
N[116]
|
NA
|
8382
|
2.729
|
3.002
|
2.00
|
5.00
|
0
|
1.0009
|
|
N[109]
|
NA
|
6562
|
1.832
|
2.002
|
1.00
|
3.00
|
0
|
1.0005
|
|
N[25]
|
NA
|
6636
|
2.597
|
3
|
2.00
|
4.00
|
0
|
1.0009
|
|
N[52]
|
NA
|
9611
|
0.062
|
err
|
0.00
|
0.00
|
err
|
err
|
alpha[1]

alpha[2]

alpha0

lambda[1]

lambda[2]

lambda[3]

lambda[4]

lambda[5]

N[87]

N[116]

N[109]

N[25]

N[52]

julian date relationship

summary table
|
param
|
covariate
|
iters_ef
|
mean
|
mode
|
hdi_89pct_lower
|
hdi_89pct_upper
|
bayes_P
|
pct.density
|
|
alpha[1]
|
lureDays
|
5139
|
-0.401
|
-0.397
|
-0.50
|
-0.29
|
0.00000
|
1.0010
|
|
alpha[2]
|
julianDt
|
2385
|
0.141
|
0.141
|
-0.01
|
0.29
|
0.33039
|
0.9320
|
|
alpha[3]
|
julianDtSq
|
2552
|
0.508
|
0.501
|
0.38
|
0.63
|
0.00000
|
1.0010
|
|
alpha0
|
NA
|
2024
|
-2.131
|
-2.123
|
-2.30
|
-1.94
|
0.00000
|
1.0010
|
|
lambda[1]
|
NA
|
3830
|
2.423
|
2.277
|
1.64
|
3.21
|
0.00000
|
1.0010
|
|
lambda[2]
|
NA
|
4019
|
1.817
|
1.735
|
1.28
|
2.37
|
0.00000
|
1.0010
|
|
lambda[3]
|
NA
|
6151
|
1.608
|
1.491
|
1.05
|
2.14
|
0.00000
|
1.0010
|
|
lambda[4]
|
NA
|
8066
|
1.043
|
1.029
|
0.71
|
1.36
|
0.00000
|
1.0010
|
|
lambda[5]
|
NA
|
4780
|
2.126
|
2.050
|
1.49
|
2.75
|
0.00000
|
1.0010
|
|
N[123]
|
NA
|
8919
|
3.054
|
2.997
|
2.00
|
5.00
|
0.00000
|
1.0009
|
|
N[116]
|
NA
|
7914
|
2.960
|
2.001
|
2.00
|
5.00
|
0.00000
|
1.0009
|
|
N[112]
|
NA
|
8646
|
1.449
|
1.000
|
1.00
|
2.00
|
0.00000
|
1.0001
|
|
N[2]
|
NA
|
6569
|
2.264
|
2.002
|
1.00
|
3.00
|
0.00000
|
1.0008
|
|
N[27]
|
NA
|
6538
|
2.242
|
2.002
|
2.00
|
3.00
|
0.00000
|
1.0009
|
alpha[1]

alpha[2]

alpha[3]

alpha0

lambda[1]

lambda[2]

lambda[3]

lambda[4]

lambda[5]

N[123]

N[116]

N[112]

N[2]

N[27]

summary table
|
param
|
covariate
|
iters_ef
|
mean
|
mode
|
hdi_89pct_lower
|
hdi_89pct_upper
|
bayes_P
|
pct.density
|
|
alpha
|
counts
|
7143
|
34.612
|
34.62
|
32.35
|
36.91
|
0
|
1.001
|
|
alpha0
|
NA
|
7133
|
2.571
|
2.534
|
2.18
|
2.95
|
0
|
1.001
|
|
lambda[1]
|
NA
|
10458
|
0.993
|
0.924
|
0.62
|
1.36
|
0
|
1.001
|
|
lambda[2]
|
NA
|
10000
|
0.998
|
0.965
|
0.70
|
1.31
|
0
|
1.001
|
|
lambda[3]
|
NA
|
10000
|
0.980
|
0.958
|
0.59
|
1.34
|
0
|
1.001
|
|
lambda[4]
|
NA
|
10000
|
0.981
|
0.946
|
0.67
|
1.29
|
0
|
1.001
|
|
lambda[5]
|
NA
|
10000
|
0.998
|
0.952
|
0.68
|
1.31
|
0
|
1.001
|
|
N[9]
|
NA
|
0
|
1.000
|
err
|
1.00
|
1.00
|
err
|
err
|
|
N[34]
|
NA
|
0
|
1.000
|
err
|
1.00
|
1.00
|
err
|
err
|
|
N[28]
|
NA
|
0
|
1.000
|
err
|
1.00
|
1.00
|
err
|
err
|
|
N[89]
|
NA
|
10000
|
1.051
|
err
|
1.00
|
1.00
|
err
|
err
|
|
N[82]
|
NA
|
10000
|
1.005
|
err
|
1.00
|
1.00
|
err
|
err
|
alpha

alpha0

lambda[1]

lambda[2]

lambda[3]

lambda[4]

lambda[5]

N[9]
## Warning in cor(X, use = "pairwise.complete.obs"): the standard deviation is zero
## Warning: Removed 50 rows containing missing values (geom_bar).

N[34]
## Warning in cor(X, use = "pairwise.complete.obs"): the standard deviation is zero
## Warning: Removed 50 rows containing missing values (geom_bar).

N[28]
## Warning in cor(X, use = "pairwise.complete.obs"): the standard deviation is zero
## Warning: Removed 50 rows containing missing values (geom_bar).

N[89]

N[82]

alpha relationship
## Warning: Removed 3 row(s) containing missing values (geom_path).
